Autorun currently only controls Win32 Applications and the WinRT Subsystem controls Universal Apps (formally known as MUI or Metro Apps)
Thanks for your answer !Right-click the app tile on the start menu and disable live tile, then restart windows.....
The bit that you are seeing with Skype is connected to the CommService and OneDrive is tied to the file system, outside an uninstall I don't think you will remove that service...